#!/usr/bin/make -f

export DEB_BUILD_MAINT_OPTIONS = hardening=+all

include /usr/share/dpkg/default.mk

sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/examples

%:
	dh $@ --sourcedirectory=src

override_dh_auto_build:
	dh_auto_build -- 'CPP=$$(CXX)'

override_dh_auto_test:
	dh_auto_test --sourcedirectory=test
	dh clean --sourcedirectory=test


override_dh_installexamples:
	dh_installexamples
	mkdir -p $(sampledir)/test;
	mkdir -p $(sampledir)/src;
	cp -aR ./test/* $(sampledir)/test;
	cp -aR ./src/humrep_and_simple.txt $(sampledir)/src;
	cp -a settings_files/primer*.txt $(sampledir)/;
	chmod -x $(sampledir)/test/thal*;
	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/long_seq_tm_test.pl ;
	sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/vgrep.pl ;
